# https://github.com/flnt/Flower.jl/tree/electrolysis git clone -b electrolysis https://github.com/flnt/Flower.jl # dans le dossier /usr/local/var/test julia --project=../Flower.jl -e 'using Pkg; Pkg.instantiate()' LD_LIBRARY_PATH :/usr/lib/x86_64-linux-gnu python3 ../../../Flower.jl/examples/flower_post_proc.py ../../../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml --func plot_all_fig_func --h5 flower_00000001.h5 --name current_lines julia +1.10.5 --project=../Flower.jl --threads=1 ../Flower.jl/examples/convergence.jl ../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml Pour le Makefile # Initialise les dépendances Julia (à lancer une fois au démarrage du conteneur) init: xvfb-run --auto-servernum --server-args="-screen 0 1920x1080x24 -nolisten tcp" julia --project=../Flower.jl -e 'using Pkg; Pkg.instantiate(); Pkg.precompile()' # Votre commande de run existante run-convergence: xvfb-run --auto-servernum --server-args="-screen 0 1920x1080x24 -nolisten tcp" julia --project=../Flower.jl --threads=1 ../Flower.jl/examples/convergence.jl ../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml coder@651071fc97ae:/usr/local/var/test$ xvfb-run --auto-servernum --server-args="-screen 0 1920x1080x24 -nolisten tcp" julia --project=../Flower.jl --threads=1 ../Flower.jl/examples/convergence.jl ../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml YAML file ../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml number of points [32, 64, 128] Print parameters from yml file elec_cond : 1.36e+02 Re : 1.00e-01 1.49e+06 1.26e+03 8.43e-04 'Re' i.e. rho/mu : 1.49e+06 1.49e+06 1.26e+03 8.43e-04 WARNING no scalar transport nb_transported_scalars: 0 diffusion time [1.7241379310344829, 3.125, 3.125] end Print parameters from yml file [20:00:09][Decl'HDF5] *** info: Plugin loaded successfully [20:00:09][PDI] *** info: Initialization successful PDI INIT status 0 Timestep 0.0001 mesh ratio 1 nx 32 ny 32 ns_advection trueERROR: LoadError: UndefVarError: `safefill_with_aliases_and_extra_already_init` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ /usr/local/var/Flower.jl/examples/convergence.jl:341 [2] include(mod::Module, _path::String) @ Base ./Base.jl:306 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [4] _start() @ Base ./client.jl:550 in expression starting at /usr/local/var/Flower.jl/examples/convergence.jl:228 [20:00:19][PDI] *** info: Finalization [20:00:19][Decl'HDF5] *** info: Closing plugin coder@651071fc97ae:/usr/local/var/test$ xvfb-run --auto-servernum --server-args="-screen 0 1920x1080x24 -nolisten tcp" julia --project=../Flower.jl --threads=1 ../Flower.jl/examples/convergence.jl ../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml YAML file ../Flower.jl/examples/convergence_diffusion_constant_conductivity_bubble_wall_Newton.yml number of points [32, 64, 128] Print parameters from yml file elec_cond : 1.36e+02 Re : 1.00e-01 1.49e+06 1.26e+03 8.43e-04 'Re' i.e. rho/mu : 1.49e+06 1.49e+06 1.26e+03 8.43e-04 WARNING no scalar transport nb_transported_scalars: 0 diffusion time [1.7241379310344829, 3.125, 3.125] end Print parameters from yml file [17:29:11][Decl'HDF5] *** info: Plugin loaded successfully [17:29:11][PDI] *** info: Initialization successful PDI INIT status 0 Timestep 0.0001 mesh ratio 1 nx 32 ny 32ERROR: LoadError: KeyError: key :bulk_velocity not found Stacktrace: [1] getindex(h::Dict{Symbol, Any}, key::Symbol) @ Base ./dict.jl:477 [2] getindex @ ~/.julia/packages/PropertyDicts/Y5nQe/src/PropertyDicts.jl:205 [inlined] [3] getproperty(pd::PropertyDict{Symbol, Any, Dict{Symbol, Any}}, k::Symbol) @ PropertyDicts ~/.julia/packages/PropertyDicts/Y5nQe/src/PropertyDicts.jl:238 [4] top-level scope @ /usr/local/var/Flower.jl/examples/convergence.jl:323 [5] include(mod::Module, _path::String) @ Base ./Base.jl:306 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [7] _start() @ Base ./client.jl:550 in expression starting at /usr/local/var/Flower.jl/examples/convergence.jl:228 [17:29:24][PDI] *** info: Finalization [17:29:24][Decl'HDF5] *** info: Closing plugin include("navier_stokes_coupled_pressure_velocity.jl") include("navier_stokes_coupled.jl") include("electrolysis_2.jl") include("electrolysis_tests.jl") include("electrolysis_print.jl") include("run_profile.jl") #for profiling include("solve_one_fluid.jl") include("compute_mass_transfer_rate.jl") include("test_functions.jl") include("post_processing.jl") [06:59:48][PDI] *** error: Error while triggering event `write_initialization': ModuleNotFoundError: No module named 'pdi' ENV PYTHONPATH=/usr/local/lib/python3/dist-packages ERROR: LoadError: UndefVarError: `BC_uL` not defined in `Main` The binding may be too new: running in world age 38879, while current world is 38905. Stacktrace: [1] top-level scope @ /usr/local/var/Flower.jl/examples/convergence.jl:766 [2] include(mod::Module, _path::String) @ Base ./Base.jl:306 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [4] _start() @ Base ./client.jl:550 in expression starting at /usr/local/var/Flower.jl/examples/convergence.jl:228 erreur ligne 766 convergence.jl dans le run forward # CORRECTION WORLD AGE : # On utilise getfield(Main, :NomVariable) pour forcer la récupération dynamique # des variables créées par eval() dans la boucle courante. run_forward!( num, gp, gu, gv, op, phS, phL; periodic_x = (sim.periodic_x == 1), periodic_y = (sim.periodic_y == 1), # --- CORRECTION DES LIENS DYNAMIQUES ICI --- BC_uL = getfield(Main, :BC_uL), BC_uS = getfield(Main, :BC_uS), BC_vL = getfield(Main, :BC_vL), BC_vS = getfield(Main, :BC_vS), BC_pL = getfield(Main, :BC_pL), BC_pS = getfield(Main, :BC_pS), BC_u = getfield(Main, :BC_u), BC_int = getfield(Main, :BC_int), BC_trans_scal = getfield(Main, :BC_trans_scal), BC_phi_ele = getfield(Main, :BC_phi_ele), # ------------------------------------------- auto_reinit = sim.auto_reinit, time_scheme = time_scheme, electrolysis = true, navier_stokes = true, ns_advection = (sim.ns_advection ==1), ns_liquid_phase = (sim.solve_Navier_Stokes_liquid_phase == 1), verbose = true, show_every = sim.show_every, electrolysis_convection = (sim.electrolysis_convection ==1), electrolysis_liquid_phase = true, electrolysis_phase_change_case = sim.electrolysis_phase_change_case, imposed_velocity = sim.imposed_velocity, adapt_timestep_mode = sim.adapt_timestep_mode, non_dimensionalize=sim.non_dimensionalize, mode_2d = sim.mode_2d, breakup = sim.breakup, ) breakup = sim.breakup, )